CDS

Accession Number TCMCG007C54319
gbkey CDS
Protein Id XP_009114280.1
Location complement(join(15048800..15049456,15049872..15049962,15050059..15050178,15050267..15050555,15050671..15050709,15050840..15051148,15051231..15051395,15051485..15051636,15051727..15051883,15051968..15052024,15052144..15052220,15052308..15052474,15052571..15052652,15052828..15052924,15053381..15053546))
Gene LOC103839528
GeneID 103839528
Organism Brassica rapa

Protein

Length 874aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009116032.3
Definition E3 ubiquitin ligase PQT3-like [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category O
Description DWNN domain, a CCHC-type zinc finger
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10624        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000209        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005815        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005856        [VIEW IN EMBL-EBI]
GO:0006275        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006508        [VIEW IN EMBL-EBI]
GO:0006511        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0015630        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0019900        [VIEW IN EMBL-EBI]
GO:0019901        [VIEW IN EMBL-EBI]
GO:0019941        [VIEW IN EMBL-EBI]
GO:0030163        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044257        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044430        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051603        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901565        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCAATATATTACAAGTTTAAGAGTGCAAGGGATTACGATACCATCGCCATGGATGGTCCTTTTATATCAGTTGGTATTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCAGTGGTAAAGACCTTGATATTGTCCTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATGAAGCGATGTTAATACCGAAGAATACATCTGTCCTTATTCGTCGAGTCCCAGGACGCCCTCGCATCACAGTTATTACTGCACAAGAGCCTAGAATCGAGAACAAAGTGGAACATGTTCAGGCTGAAACCAGCAATTCTCATGTTCCTGAACCGTCTGCATCGAAATATCCTGAAGATGAGTTCGACGAGTTCGGGAATGATTTTTACTCCATTCCCGCTGTCCAAGTTGCCCAGCATAGTAATCCATGTCCTGTTCTTGCACCAACAGAAGAGAAAGTAGATGAAGAAAGCAAACTTCAGGCGTTGATTGACACCCCAGCACTTGACTGGCAGAGACAAGGTCAAGATAATTTTGGGGCCGGGAGAGGTTACGGAAGGGGTATGAATGGAAGGATGGGTGGACGTGGTTTTGGAATGGAAAGGAAAACACCACCTCCGGGATATATTTGCCATCGTTGCAATGTCCCTGGACATTTAATTCAGCATTGCCCCACAAATGGTGACCCTACCTACGATGTTAAGAGAGTTAAACCACCTACTGGTATCCCCAAGTCCATGTTGGTGGCAACCCCTGATGGTTCTTATTCGTTGCCAAGTGGTGCAGTTGCAGTTCTTAAACCTAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCGTCAACGACACGCTCTGTAGGAGAACTTCCGCCCGAGCTGAAGTGTCCGCTATGCAAAGAAGTAATGAAAGATGCTGCACTTACAAGCAAATGTTGTTTCCAGAGCTTCTGTGACAAGTGTATCCGGGATCACATTATTGCAAAGTCGAAGTGTGTCTGTGGAGAAACTGATGTACTTGCTGACGATCTTCTACCAAACAAGACGCTAAGGGATGCCATAAACCGTATTCTGGAAGCCGGAAACGATAGCATTGAGAATGCCGGCAGCGCGGGCCATATCACAGATTTGGAGTCTGCACGCTGTCTTCCTCCTCCCAAGGGTCGATCTCCTGCTACATCTGCTGCATCTAAAGGCGAGAAGAAACCAGCTCATAGTAACAACAACGATGCTCCAACAGTAAAACTGCCAACGGAAATTGCAGAGATCACAAGTGCCCCTCGGGCATCGGCAGAAGATAAAGTGGAAAAGCCAGTGGATGCGTGTGAAAGCACTCAAGGGTCCGTTTCTGTGAAAGAAGCAACAGTCCCAAAGATGAATACGCAAGCTCCTCCCAAAGAAGAAGTGCAGCAACAGGTTGCTGCTGGAGAGCCAGCAAAAAAGAAGAAAAAGAAACCCAGAGTTCCTGGAACTGACATGCAACAATGGAATCATGTGCCGGATCTAGCAGGGCCTGACTATAATATGATGCAAATGGGTCCGGGTCCAGGTCCCCAGTACTTCAACGGCATGCAACCTGGCTTCAACGGCTTTCATCCCGGCTTTAATGGGTTTCCAGGCCCTTTTCCGGGCCAGATGCCTCCATTTATGGGGTACGGGATAAACCCAATGGAGATCGCATTTGGTAGGGGTATGAATATGATGCATCCAGATCCATTTGCTGCACAGGGATTTGGATTCCCTAACATACCACCACCTCACAGGGACTTGGCGGAGTTGGGAAACCGTATGAATCTCCAACGTGCCATGATGGGCAGAGACGAAGTCGAAGCTCGGAAAGCTGAGATGTTGAGAAAACGGGAAAACGAGAGACGAACCGAAGGTGGGAAGGTGTTTAGGGATGGAGAGAATAGCAGAATGATGATGAACAATGGGACTTCAGCGTCTGCATCATCCATCAACCCTAACAAATCTCGACAAGCACCTCCGCCACCGAATTCGACGGAGTACGACCGACGCAGACGGCCGGAGAGATTGTCTCCCGAGCATCATCCGCCGACGCGTAAGTCAAAGTCTCCGTCTCGAGATTCCAAGAGAAAATACGAACGCTATCCCGAGGAACGTGATCGTCAACGCGACCGTGAAAGGTCGTCCCGTCACCAAGACCTAGATCGTGAACACGACCACCGCGCTCGCGACCGTCGCGATGAAGACAGAAGCCGAGACCACCGTCACAGCCACCGAGACTCGGATCGTAACCAACATCACCACCGTAAACGATCGGCACCTCCGCCGTCGGAGCCGACCGCTGCAACTAAATCAGAGATGGAAAAGTCAAGCGTGTTCGCTCGGATAAGCTTTCCGGAGGAAGAAACTTCCAGCAAACGAAGAAAGGTGTCTTCGTCTTCTTCTGCTTCCGTGGCGGAGCCGCCTGTCGCCGTCAGTACATCAATGCACCGTCACAGTCGTAAGGAGATTGAGGTAGCGGATTATGAGTCGAGCGACGAAGACAGGCATTTCAAGAGGAAGCCATCGAGGTACGAGCGGTCTCCACCAGTGGTGATTACTGATGCGAGTGATGATAAGCATCGATACTCGAAACGCGGCAAGGGAGAGAGATCTCGAGCTTAG
Protein:  
MAIYYKFKSARDYDTIAMDGPFISVGILKDKIFETKHLGSGKDLDIVLSNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRITVITAQEPRIENKVEHVQAETSNSHVPEPSASKYPEDEFDEFGNDFYSIPAVQVAQHSNPCPVLAPTEEKVDEESKLQALIDTPALDWQRQGQDNFGAGRGYGRGMNGRMGGRGFGMERKTPPPGYICHRCNVPGHLIQHCPTNGDPTYDVKRVKPPTGIPKSMLVATPDGSYSLPSGAVAVLKPNEDAFEKEMEGLPSTTRSVGELPPELKCPLCKEVMKDAALTSKCCFQSFCDKCIRDHIIAKSKCVCGETDVLADDLLPNKTLRDAINRILEAGNDSIENAGSAGHITDLESARCLPPPKGRSPATSAASKGEKKPAHSNNNDAPTVKLPTEIAEITSAPRASAEDKVEKPVDACESTQGSVSVKEATVPKMNTQAPPKEEVQQQVAAGEPAKKKKKKPRVPGTDMQQWNHVPDLAGPDYNMMQMGPGPGPQYFNGMQPGFNGFHPGFNGFPGPFPGQMPPFMGYGINPMEIAFGRGMNMMHPDPFAAQGFGFPNIPPPHRDLAELGNRMNLQRAMMGRDEVEARKAEMLRKRENERRTEGGKVFRDGENSRMMMNNGTSASASSINPNKSRQAPPPPNSTEYDRRRRPERLSPEHHPPTRKSKSPSRDSKRKYERYPEERDRQRDRERSSRHQDLDREHDHRARDRRDEDRSRDHRHSHRDSDRNQHHHRKRSAPPPSEPTAATKSEMEKSSVFARISFPEEETSSKRRKVSSSSSASVAEPPVAVSTSMHRHSRKEIEVADYESSDEDRHFKRKPSRYERSPPVVITDASDDKHRYSKRGKGERSRA